STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ96929.1Hypothetical protein. (48 aa)    
Predicted Functional Partners:
ERJ96928.1
Cof-like hydrolase; KEGG: ctu:CTU_00420 6.2e-26 yidA; sugar phosphate phosphatase K07024; Psort location: Cytoplasmic, score: 7.50.
       0.773
ERJ96927.1
KEGG: sku:Sulku_0529 9.1e-23 polysaccharide deacetylase; K11931 biofilm PGA synthesis lipoprotein PgaB; Psort location: Cytoplasmic, score: 7.50.
       0.543
ERJ96911.1
O-antigen polymerase; KEGG: bpt:Bpet1821 0.0075 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242; Psort location: CytoplasmicMembrane, score: 10.00.
       0.439
ERJ96926.1
Stage II sporulation protein P; Psort location: Cytoplasmic, score: 7.50.
       0.418
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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