STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (296 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.997
ERJ96894.1
KEGG: ral:Rumal_2228 6.7e-155 aspartate-semialdehyde dehydrogenase K00133; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.990
ERJ88653.1
KEGG: eha:Ethha_2767 1.3e-103 homoserine dehydrogenase; K00003 homoserine dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.918
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.810
ERJ94719.1
Putative aspartate transaminase; KEGG: ral:Rumal_1743 1.9e-141 class I/II aminotransferase; K10907 aminotransferase; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.795
ERJ87633.1
Putative glycerate dehydrogenase; KEGG: ral:Rumal_3061 1.8e-81 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; K00018 glycerate dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
    
 0.747
ERJ87467.1
N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).
    
  0.738
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 
 0.660
ERJ91156.1
Aspartate kinase; KEGG: rho:RHOM_12640 2.1e-144 aspartate kinase K00928; Psort location: Cytoplasmic, score: 7.50; Belongs to the aspartokinase family.
 
 
 0.617
ERJ96636.1
KEGG: ral:Rumal_2960 3.8e-74 Prephenate dehydratase K14170; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.607
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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