STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ96687.1Hypothetical protein. (55 aa)    
Predicted Functional Partners:
ERJ96688.1
KEGG: pfe:PSF113_3206 1.8e-10 GntR family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
       0.773
ERJ96689.1
TIGR00659 family protein; KEGG: apb:SAR116_1537 4.9e-33 LrgB-like protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
ERJ96690.1
LrgA family protein; KEGG: bcz:BCZK3375 5.8e-14 holin-like protein K06518; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
ERJ96686.1
Cellulase; KEGG: ccb:Clocel_0912 1.7e-101 cellulase; Psort location: Extracellular, score: 9.73; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.671
ERJ96691.1
MATE efflux family protein; KEGG: ssr:SALIVB_2015 4.1e-29 queuine tRNA-ribosyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.480
ERJ96692.1
Hypothetical protein.
       0.471
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.