STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ96653.1KEGG: pfe:PSF113_5648 2.0e-11 asnC family transcriptional regulator K05800; Psort location: Cytoplasmic, score: 7.50. (147 aa)    
Predicted Functional Partners:
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
  
 
 0.813
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
   
 
 0.797
ERJ96743.1
PTS system glucose-specific EIICBA component family protein; KEGG: bpo:BP951000_0587 3.8e-239 ptsG; PTS system glucose subfamily transporter subunit IIA; K02763 PTS system, D-glucosamine-specific IIA component; K02764 PTS system, D-glucosamine-specific IIB component K02765; Psort location: CytoplasmicMembrane, score: 10.00.
   
 
  0.788
ERJ87332.1
KEGG: tid:Thein_0873 1.3e-94 uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.667
ERJ92208.1
Glutamate synthase [NADPH], large subunit; KEGG: cle:Clole_4244 0. glutamate synthase K00284; Psort location: CytoplasmicMembrane, score: 8.16.
     
 0.624
ERJ97600.1
Hypothetical protein; KEGG: sha:SH0994 0.0081 agrC; AgrC protein; K07706 two-component system, AgrA family, sensor histidine kinase AgrC; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.543
ERJ91134.1
Radical SAM domain protein; KEGG: gbm:Gbem_2050 3.2e-36 bifunctional TatD family magnesium-dependent deoxyribonuclease/radical SAM domain iron-sulfur oxidoreductase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.504
ERJ96656.1
RNA methyltransferase, RsmD family; KEGG: oih:OB1450 1.6e-34 hypothetical protein; K08316 16S rRNA (guanine966-N2)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.465
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.461
ERJ96651.1
Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
       0.461
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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