STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ96461.1FeoA domain protein; Psort location: Cytoplasmic, score: 7.50. (73 aa)    
Predicted Functional Partners:
ERJ96460.1
Ferrous iron transport protein B; KEGG: cpb:Cphamn1_0248 3.4e-08 trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.964
ERJ96462.1
FeoA domain protein.
 
   
 0.906
ERJ94927.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.711
ERJ96463.1
Hypothetical protein.
       0.505
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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