STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ94691.1KEGG: mmw:Mmwyl1_3712 2.1e-06 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97. (334 aa)    
Predicted Functional Partners:
ERJ95040.1
LysR substrate binding domain protein; KEGG: cnc:CNE_2c21350 1.8e-17 pld2; pyridoxal 4-dehydrogenase Pld; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.630
ERJ92208.1
Glutamate synthase [NADPH], large subunit; KEGG: cle:Clole_4244 0. glutamate synthase K00284; Psort location: CytoplasmicMembrane, score: 8.16.
  
  
 0.621
ERJ90877.1
LysR substrate binding domain protein; KEGG: hiq:CGSHiGG_09680 2.3e-11 DNA-binding transcriptional activator GcvA K03566; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
  
     0.465
ERJ95747.1
Cyclic diguanylate phosphodiesterase domain protein; KEGG: vfi:VF_0087 3.6e-45 sensory transduction protein kinase K00936; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.428
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.