STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ93509.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (60 aa)    
Predicted Functional Partners:
ERJ93507.1
N-acetylmuramoyl-L-alanine amidase; KEGG: mas:Mahau_0598 4.5e-23 cell wall hydrolase/autolysin; K01448 N-acetylmuramoyl-L-alanine amidase.
       0.773
queH
Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
       0.773
ERJ93506.1
PSP1 protein; KEGG: gka:GK0026 5.1e-70 signal peptidase II; Psort location: Cytoplasmic, score: 7.50.
       0.623
thrS
threonine--tRNA ligase; KEGG: ral:Rumal_3042 7.6e-250 threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.532
ERJ93505.1
KEGG: ral:Rumal_2757 4.7e-44 hypothetical protein; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.
       0.479
ERJ93504.1
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: ral:Rumal_2759 2.6e-82 Arginine decarboxylase; Psort location: Cytoplasmic, score: 7.50.
       0.467
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.