STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ92489.1KEGG: pen:PSEEN2333 7.8e-90 XcpR-2; type II secretion pathway protein E K02454; Psort location: Cytoplasmic, score: 9.97. (550 aa)    
Predicted Functional Partners:
ERJ92497.1
Bacterial type II secretion system protein F domain protein; KEGG: pfe:PSF113_5005 5.0e-40 pilC; protein PilC K02653; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.998
ERJ92496.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16.
 
 
 
 0.967
ERJ97192.1
Prepilin-type cleavage/methylation protein; Psort location: CytoplasmicMembrane, score: 9.55.
 
 0.948
ERJ92486.1
Bacterial peptidase A24 protein; KEGG: ral:Rumal_2392 5.7e-71 prepilin peptidase K02654; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.903
ERJ93742.1
Prepilin-type cleavage/methylation protein.
  
 0.854
ERJ92488.1
Twitching motility protein; KEGG: pfe:PSF113_5539 1.4e-76 pilT2; protein PilT K02669; Psort location: Cytoplasmic, score: 9.97.
 
  
0.854
ERJ93741.1
Hypothetical protein.
  
  
 0.829
ERJ95747.1
Cyclic diguanylate phosphodiesterase domain protein; KEGG: vfi:VF_0087 3.6e-45 sensory transduction protein kinase K00936; Psort location: CytoplasmicMembrane, score: 8.78.
 
 
 0.818
ERJ92490.1
Hypothetical protein.
       0.773
ERJ96160.1
Hypothetical protein; KEGG: mia:OCU_03410 0.00032 DNA polymerase III subunit gamma and tau; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.725
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.