STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ91134.1Radical SAM domain protein; KEGG: gbm:Gbem_2050 3.2e-36 bifunctional TatD family magnesium-dependent deoxyribonuclease/radical SAM domain iron-sulfur oxidoreductase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 7.50. (210 aa)    
Predicted Functional Partners:
ERJ91262.1
KEGG: eha:Ethha_2597 2.9e-67 TatD family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97.
      0.915
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.886
ERJ91136.1
Metallo-beta-lactamase domain protein; KEGG: fnu:FN0900 1.2e-29 metal dependent hydrolase K01567; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.838
rlmH
Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
  
    0.765
ERJ95747.1
Cyclic diguanylate phosphodiesterase domain protein; KEGG: vfi:VF_0087 3.6e-45 sensory transduction protein kinase K00936; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.732
ERJ87332.1
KEGG: tid:Thein_0873 1.3e-94 uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.651
murA-2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.600
ERJ94442.1
Putative GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
  0.529
ERJ96885.1
RelA/SpoT domain protein; KEGG: ssd:SPSINT_2153 2.3e-49 GTP pyrophosphokinase; Psort location: Cytoplasmic, score: 7.50.
    
  0.522
ERJ96653.1
KEGG: pfe:PSF113_5648 2.0e-11 asnC family transcriptional regulator K05800; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.504
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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