node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ERJ89728.1 | ERJ89730.1 | RUMCAL_02927 | RUMCAL_02929 | DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Hypothetical protein. | 0.416 |
ERJ89728.1 | rnj | RUMCAL_02927 | RUMCAL_02928 | DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.646 |
ERJ89728.1 | rplI | RUMCAL_02927 | RUMCAL_02926 | DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.642 |
ERJ89730.1 | ERJ89728.1 | RUMCAL_02929 | RUMCAL_02927 | Hypothetical protein. | DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | 0.416 |
ERJ89730.1 | rnj | RUMCAL_02929 | RUMCAL_02928 | Hypothetical protein. | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.538 |
ERJ95020.1 | rnj | RUMCAL_01732 | RUMCAL_02928 | Putative geranyltranstransferase; KEGG: ral:Rumal_1965 3.7e-67 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97. | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.703 |
ERJ95020.1 | rny | RUMCAL_01732 | RUMCAL_02256 | Putative geranyltranstransferase; KEGG: ral:Rumal_1965 3.7e-67 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97. | YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. | 0.400 |
ERJ95747.1 | hfq | RUMCAL_01597 | RUMCAL_00743 | Cyclic diguanylate phosphodiesterase domain protein; KEGG: vfi:VF_0087 3.6e-45 sensory transduction protein kinase K00936; Psort location: CytoplasmicMembrane, score: 8.78. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.554 |
ERJ95747.1 | rnj | RUMCAL_01597 | RUMCAL_02928 | Cyclic diguanylate phosphodiesterase domain protein; KEGG: vfi:VF_0087 3.6e-45 sensory transduction protein kinase K00936; Psort location: CytoplasmicMembrane, score: 8.78. | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.471 |
hfq | ERJ95747.1 | RUMCAL_00743 | RUMCAL_01597 | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Cyclic diguanylate phosphodiesterase domain protein; KEGG: vfi:VF_0087 3.6e-45 sensory transduction protein kinase K00936; Psort location: CytoplasmicMembrane, score: 8.78. | 0.554 |
hfq | rnj | RUMCAL_00743 | RUMCAL_02928 | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.470 |
hpf | rnj | RUMCAL_00817 | RUMCAL_02928 | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.580 |
hpf | rplI | RUMCAL_00817 | RUMCAL_02926 | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.954 |
hpf | topA | RUMCAL_00817 | RUMCAL_02372 | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.434 |
rnj | ERJ89728.1 | RUMCAL_02928 | RUMCAL_02927 | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | 0.646 |
rnj | ERJ89730.1 | RUMCAL_02928 | RUMCAL_02929 | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | Hypothetical protein. | 0.538 |
rnj | ERJ95020.1 | RUMCAL_02928 | RUMCAL_01732 | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | Putative geranyltranstransferase; KEGG: ral:Rumal_1965 3.7e-67 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.97. | 0.703 |
rnj | ERJ95747.1 | RUMCAL_02928 | RUMCAL_01597 | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | Cyclic diguanylate phosphodiesterase domain protein; KEGG: vfi:VF_0087 3.6e-45 sensory transduction protein kinase K00936; Psort location: CytoplasmicMembrane, score: 8.78. | 0.471 |
rnj | hfq | RUMCAL_02928 | RUMCAL_00743 | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.470 |
rnj | hpf | RUMCAL_02928 | RUMCAL_00817 | Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.580 |