STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ89233.1FMN-binding domain protein; KEGG: ddh:Desde_3673 6.9e-15 flavocytochrome c; K00244 fumarate reductase flavoprotein subunit; Psort location: Cytoplasmic, score: 7.50. (148 aa)    
Predicted Functional Partners:
ERJ89234.1
Hypothetical protein; KEGG: eci:UTI89_C1055 1.2e-12 yccM; electron transport protein YccM; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.906
ERJ89232.1
FMN-binding domain protein; KEGG: dsy:DSY3139 2.4e-12 fumarate reductase flavoprotein subunit; K00244 fumarate reductase flavoprotein subunit; Psort location: Cellwall, score: 9.21.
 
    
0.833
ERJ89235.1
Hypothetical protein.
       0.773
ERJ89236.1
Hypothetical protein.
       0.773
ERJ94883.1
KEGG: fsc:FSU_0547 1.3e-220 putative adenylylsulfate reductase, alpha subunit; K00394 adenylylsulfate reductase, subunit A; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
  0.621
argH
Argininosuccinate lyase; KEGG: ral:Rumal_2070 6.6e-180 argininosuccinate lyase; K01755 argininosuccinate lyase; Psort location: Cytoplasmic, score: 7.50.
    
  0.539
ERJ89237.1
Dockerin type I repeat-containing domain protein; KEGG: bbp:BBPR_1740 0.0026 Subtilisin family peptidase.
 
     0.535
ERJ89230.1
Hypothetical protein.
       0.437
ERJ89231.1
KEGG: fsc:FSU_2175 3.2e-226 heavy metal translocating P-type ATPase; Psort location: CytoplasmicMembrane, score: 8.78.
       0.437
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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