STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ88604.1HNH endonuclease domain protein; KEGG: hau:Haur_5242 0.0073 RNA-directed DNA polymerase. (116 aa)    
Predicted Functional Partners:
ERJ97438.1
TraG/TraD family protein; Psort location: CytoplasmicMembrane, score: 8.16.
   
 
 0.795
ERJ96284.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.795
ERJ93793.1
KEGG: ral:Rumal_3726 2.4e-269 homocysteine S-methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase; Psort location: Cytoplasmic, score: 7.50.
    
  0.789
ERJ88892.1
Phage portal protein, HK97 family; Psort location: CytoplasmicMembrane, score: 8.16.
 
  
 0.698
ERJ86737.1
Hypothetical protein.
 
  
 0.698
ERJ95569.1
Phage portal protein, HK97 family; Psort location: CytoplasmicMembrane, score: 8.16.
 
  
 0.697
ERJ97074.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
 
  
 0.685
ERJ97073.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.675
ERJ95944.1
Putative phage terminase, large subunit; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.669
ERJ95572.1
Putative phage terminase, large subunit; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.667
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.