STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERJ86739.1KEGG: ova:OBV_44960 1.0e-133 group II intron-encoded protein; Psort location: Cytoplasmic, score: 7.50. (603 aa)    
Predicted Functional Partners:
ERJ96452.1
CRISPR-associated endoribonuclease Cas2; KEGG: elm:ELI_3148 1.9e-24 DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.862
ERJ86740.1
Endopeptidase Clp; KEGG: bse:Bsel_0791 9.0e-25 peptidase S14 ClpP; K01358 ATP-dependent Clp protease, protease subunit; Belongs to the peptidase S14 family.
       0.485
Your Current Organism:
Ruminococcus callidus
NCBI taxonomy Id: 411473
Other names: R. callidus ATCC 27760, Ruminococcus callidus ATCC 27760
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.