Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDP25633.1Hypothetical protein; Psort location: Cytoplasmic, score:8.87. (278 aa)    
Predicted Functional Partners:
EDP25632.1
Sigma-70 region 2; KEGG: chu:CHU_3562 0.0033 rpoE; RNA polymerase sigma-70 factor, ECF subfamily K00960; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.87.
       0.773
EDP25634.1
Hypothetical protein.
       0.524
EDP25635.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.26.
       0.462
EDP25636.1
Sigma-70 region 2; Psort location: Cytoplasmic, score:8.87; Belongs to the sigma-70 factor family.
       0.462
EDP25631.1
Putative butyryl-CoA:acetate CoA-transferase; KEGG: azo:azo3544 2.6e-62 probable 4-hydroxybutyrate coenzyme A transferase K01041; COG: COG0427 Acetyl-CoA hydrolase; Psort location: Cytoplasmic, score:8.87.
       0.447
EDP25637.1
Hypothetical protein.
       0.441
Your Current Organism:
Coprococcus eutactus
NCBI taxonomy Id: 411474
Other names: C. eutactus ATCC 27759, Coprococcus eutactus ATCC 27759
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