Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDP25638.1Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.99. (158 aa)    
Predicted Functional Partners:
EDP25637.1
Hypothetical protein.
       0.566
EDP25635.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.26.
      
0.538
EDP25636.1
Sigma-70 region 2; Psort location: Cytoplasmic, score:8.87; Belongs to the sigma-70 factor family.
       0.538
EDP25639.1
Ser/Thr phosphatase family protein; KEGG: bce:BC2476 1.5e-57 phosphoesterase; COG: COG1408 Predicted phosphohydrolases; Psort location: Cytoplasmic, score:8.87.
       0.489
EDP25634.1
Hypothetical protein.
       0.474
Your Current Organism:
Coprococcus eutactus
NCBI taxonomy Id: 411474
Other names: C. eutactus ATCC 27759, Coprococcus eutactus ATCC 27759
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