Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDP25414.1KEGG: shn:Shewana3_3435 9.9e-22 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.98; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
EDP25413.1
Hypothetical protein; COG: NOG32695 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
       0.773
EDP25502.1
Cupin domain protein; KEGG: lpl:lp_2852 9.6e-24 4-carboxymuconolactone decarboxylase (putative) K01607; COG: COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; Psort location: Cytoplasmic, score:8.87.
 
   
 0.572
EDP25411.1
Hypothetical protein.
       0.563
EDP25412.1
KEGG: efa:EF1922 0.00024 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; COG: COG1609 Transcriptional regulators.
       0.563
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.511
EDP25291.1
Cyclic nucleotide-binding domain protein; COG: COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Psort location: Cytoplasmic, score:8.87.
  
 
 0.511
EDP25409.1
DNA-binding helix-turn-helix protein; COG: NOG36365 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
  
    0.478
EDP25410.1
HipA domain protein; COG: COG3550 Uncharacterized protein related to capsule biosynthesis enzymes; Psort location: Cytoplasmic, score:8.87.
       0.473
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.442
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.441
Your Current Organism:
Coprococcus eutactus
NCBI taxonomy Id: 411474
Other names: C. eutactus ATCC 27759, Coprococcus eutactus ATCC 27759
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