STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP25421.1Hypothetical protein; Psort location: Cytoplasmic, score:8.87. (53 aa)    
Predicted Functional Partners:
EDP25422.1
Rubredoxin; KEGG: cpr:CPR_0938 2.9e-63 periplasmic [Fe] hydrogenase 1 K00532; COG: COG1592 Rubrerythrin.
  
  
 0.840
EDP25424.1
Putative superoxide reductase; KEGG: dvu:DVU3183 5.7e-26 rbo; desulfoferrodoxin K05919; COG: COG2033 Desulfoferrodoxin; Psort location: Cytoplasmic, score:8.87.
     
 0.670
EDP25419.1
Thioredoxin; KEGG: lwe:lwe1188 3.1e-11 trxA; thioredoxin K00384; COG: COG0526 Thiol-disulfide isomerase and thioredoxins; Psort location: Cytoplasmic, score:8.87.
  
 
 0.634
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
       0.612
EDP25420.1
Hypothetical protein.
       0.542
EDP25425.1
Hypothetical protein; Psort location: Extracellular, score:8.82.
       0.504
EDP26752.1
Rubredoxin; KEGG: sat:SYN_02123 3.1e-27 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin; Psort location: Cytoplasmic, score:8.87.
  
  
 0.501
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.499
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.491
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.470
Your Current Organism:
Coprococcus eutactus
NCBI taxonomy Id: 411474
Other names: C. eutactus ATCC 27759, Coprococcus eutactus ATCC 27759
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