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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP25473.1Sigma-70, region 4; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87. (166 aa)    
Predicted Functional Partners:
EDP25472.1
Hypothetical protein.
 
     0.954
EDP25474.1
Hypothetical protein; COG: COG5660 Predicted integral membrane protein; Psort location: Cytoplasmic, score:8.87.
 
   0.891
EDP25475.1
Sigma-70 region 2; KEGG: shn:Shewana3_0763 1.7e-10 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; COG: COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location: Cytoplasmic, score:8.87; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.770
EDP25462.1
Hypothetical protein.
  
     0.710
EDP25468.1
Hypothetical protein.
  
     0.656
EDP25471.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.646
EDP25466.1
Hypothetical protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score:8.87.
  
     0.627
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.611
EDP27479.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
  
 
 0.604
EDP25463.1
Hypothetical protein; KEGG: spi:MGAS10750_Spy1680 1.6e-37 replicative DNA helicase K01529; COG: COG1484 DNA replication protein; Psort location: Cytoplasmic, score:8.87.
  
    0.590
Your Current Organism:
Coprococcus eutactus
NCBI taxonomy Id: 411474
Other names: C. eutactus ATCC 27759, Coprococcus eutactus ATCC 27759
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