STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP25487.1CHC2 zinc finger domain protein; KEGG: vch:VC0518 4.3e-13 dnaG; PTS system, fructose-specific IIA/FPR component K02768:K02784; COG: COG0358 DNA primase (bacterial type); Psort location: Cytoplasmic, score:8.87. (211 aa)    
Predicted Functional Partners:
EDP25486.1
Hypothetical protein; COG: NOG17369 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
 
     0.884
EDP25488.1
Virulence-associated protein E; COG: COG5545 Predicted P-loop ATPase and inactivated derivatives; Psort location: Cytoplasmic, score:8.87.
 
     0.812
EDP25485.1
Hypothetical protein.
       0.773
EDP25484.1
Recombinase; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score:8.87.
 
     0.572
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.561
EDP25949.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
 
     0.536
EDP25597.1
Phage/plasmid primase, P4 family domain protein; KEGG: hwa:HQ4022A 4.8e-07 putative P4-specific DNA primase; COG: COG3378 Predicted ATPase; Psort location: Cytoplasmic, score:8.87.
  
 
 0.532
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
   
  
 0.501
hydF
Hydrogenase maturation GTPase HydF; KEGG: hpa:HPAG1_0820 6.1e-10 GTP-binding protein-like protein K00058; COG: COG1160 Predicted GTPases; Psort location: Cytoplasmic, score:8.87.
   
  
 0.501
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
  
 0.498
Your Current Organism:
Coprococcus eutactus
NCBI taxonomy Id: 411474
Other names: C. eutactus ATCC 27759, Coprococcus eutactus ATCC 27759
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