Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDP25375.1Topoisomerase DNA-binding C4 zinc finger domain protein; KEGG: mth:MTH1624 6.6e-07 DNA topoisomerase I K03168; COG: COG1112 Superfamily I DNA and RNA helicases and helicase subunits; Psort location: Cytoplasmic, score:8.87. (1162 aa)    
Predicted Functional Partners:
FbpA
KEGG: cno:NT01CX_1417 0.0052 ribonuclease R; COG: COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP; Psort location: Cytoplasmic, score:8.87.
  
    0.761
EDP25376.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.539
EDP25374.1
YgiT-type zinc finger domain protein; COG: NOG06495 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.99.
       0.461
EDP25373.1
Hypothetical protein; KEGG: bsu:BG13136 0.0044 yjbG; oligoendopeptidase F homolog K08602; COG: COG1512 Beta-propeller domains of methanol dehydrogenase type; Psort location: CytoplasmicMembrane, score:9.26.
       0.442
EDP26908.1
Fic family protein; COG: COG3177 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.87.
 
     0.413
Your Current Organism:
Coprococcus eutactus
NCBI taxonomy Id: 411474
Other names: C. eutactus ATCC 27759, Coprococcus eutactus ATCC 27759
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