Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDP24915.1Hypothetical protein; Psort location: Extracellular, score:7.50. (34 aa)    
Predicted Functional Partners:
EDP24914.1
Cold-shock DNA-binding domain protein; COG: COG1278 Cold shock proteins; Psort location: Cytoplasmic, score:9.98.
       0.517
EDP24916.1
Kinase, PfkB family; KEGG: ath:At2g31390 5.9e-63 T28P16.12; pfkB-type carbohydrate kinase family protein K00847; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score:9.98.
       0.456
Your Current Organism:
Coprococcus eutactus
NCBI taxonomy Id: 411474
Other names: C. eutactus ATCC 27759, Coprococcus eutactus ATCC 27759
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