STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP25007.1Hypothetical protein; KEGG: ago:ABL041W 0.0063 ABL041Wp; mitochondrial ATPase K08956; COG: NOG16880 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87; Belongs to the UPF0342 family. (115 aa)    
Predicted Functional Partners:
rnj
Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.789
EDP25005.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
       0.781
EDP25004.1
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.696
EDP25003.1
COG: COG4472 Uncharacterized protein conserved in bacteria.
  
    0.691
EDP25009.1
O-methyltransferase; KEGG: cpe:CPE1772 4.6e-40 probable O-methyltransferase K00599; COG: COG4122 Predicted O-methyltransferase; Psort location: Cytoplasmic, score:8.87.
       0.662
EDP25008.1
Hypothetical protein; KEGG bba:Bd0132 0.0025 predicted periplasmic solute-binding protein.
       0.659
EDP25010.1
Peptidase, U32 family; KEGG: cac:CAC1687 3.7e-118 collagenase family protease K08303; COG: COG0826 Collagenase and related proteases; Psort location: Cytoplasmic, score:8.87.
       0.586
yqeV
tRNA methylthiotransferase YqeV; KEGG: ctc:CTC02027 5.0e-98 Fe-S oxidoreductase; COG: COG0621 2-methylthioadenine synthetase; Psort location: Cytoplasmic, score:8.87.
       0.465
Your Current Organism:
Coprococcus eutactus
NCBI taxonomy Id: 411474
Other names: C. eutactus ATCC 27759, Coprococcus eutactus ATCC 27759
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