EEU97100.1 protein (Faecalibacterium prausnitzii A2165)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EEU97100.1

Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (184 aa)

Predicted Functional Partners:

EEU97098.1

0.986

EEU97099.1

0.962

EEU95529.1

0.873

EEU95497.1

0.873

ecfA

0.812

ecfA-2

0.812

EEU95496.1

0.719

EEU97101.1

0.555

Your Current Organism:

Faecalibacterium prausnitzii A2165

NCBI taxonomy Id: 411483
Other names: F. prausnitzii A2-165, Faecalibacterium prausnitzii A2-165

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEU95496.1	EEU95497.1	FAEPRAA2165_02948	FAEPRAA2165_02949	KEGG: mlo:mlr8214 5.6e-35 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 9.82.	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.987
EEU95496.1	EEU95529.1	FAEPRAA2165_02948	FAEPRAA2165_02788	KEGG: mlo:mlr8214 5.6e-35 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 9.82.	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.859
EEU95496.1	EEU97098.1	FAEPRAA2165_02948	FAEPRAA2165_01277	KEGG: mlo:mlr8214 5.6e-35 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 9.82.	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.897
EEU95496.1	EEU97100.1	FAEPRAA2165_02948	FAEPRAA2165_01279	KEGG: mlo:mlr8214 5.6e-35 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 9.82.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.719
EEU95496.1	ecfA	FAEPRAA2165_02948	FAEPRAA2165_02789	KEGG: mlo:mlr8214 5.6e-35 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 9.82.	ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.630
EEU95496.1	ecfA-2	FAEPRAA2165_02948	FAEPRAA2165_02790	KEGG: mlo:mlr8214 5.6e-35 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 9.82.	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.630
EEU95497.1	EEU95496.1	FAEPRAA2165_02949	FAEPRAA2165_02948	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: mlo:mlr8214 5.6e-35 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 9.82.	0.987
EEU95497.1	EEU97099.1	FAEPRAA2165_02949	FAEPRAA2165_01278	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	Cobalt ABC transporter, ATP-binding protein; KEGG: fal:FRAAL3863 6.5e-41 putative ABC transport protein, ATPase component; Psort location: CytoplasmicMembrane, score: 7.88.	0.773
EEU95497.1	EEU97100.1	FAEPRAA2165_02949	FAEPRAA2165_01279	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.873
EEU95497.1	ecfA	FAEPRAA2165_02949	FAEPRAA2165_02789	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.971
EEU95497.1	ecfA-2	FAEPRAA2165_02949	FAEPRAA2165_02790	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.971
EEU95529.1	EEU95496.1	FAEPRAA2165_02788	FAEPRAA2165_02948	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: mlo:mlr8214 5.6e-35 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 9.82.	0.859
EEU95529.1	EEU97099.1	FAEPRAA2165_02788	FAEPRAA2165_01278	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	Cobalt ABC transporter, ATP-binding protein; KEGG: fal:FRAAL3863 6.5e-41 putative ABC transport protein, ATPase component; Psort location: CytoplasmicMembrane, score: 7.88.	0.962
EEU95529.1	EEU97100.1	FAEPRAA2165_02788	FAEPRAA2165_01279	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.873
EEU95529.1	ecfA	FAEPRAA2165_02788	FAEPRAA2165_02789	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.999
EEU95529.1	ecfA-2	FAEPRAA2165_02788	FAEPRAA2165_02790	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.999
EEU97098.1	EEU95496.1	FAEPRAA2165_01277	FAEPRAA2165_02948	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: mlo:mlr8214 5.6e-35 ABC transporter protein, ATP binding component K02056; Psort location: CytoplasmicMembrane, score: 9.82.	0.897
EEU97098.1	EEU97099.1	FAEPRAA2165_01277	FAEPRAA2165_01278	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	Cobalt ABC transporter, ATP-binding protein; KEGG: fal:FRAAL3863 6.5e-41 putative ABC transport protein, ATPase component; Psort location: CytoplasmicMembrane, score: 7.88.	0.992
EEU97098.1	EEU97100.1	FAEPRAA2165_01277	FAEPRAA2165_01279	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.986
EEU97098.1	EEU97101.1	FAEPRAA2165_01277	FAEPRAA2165_01280	Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein.	0.407