STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR99210.1Transcriptional regulator, MerR family; COG: COG0789 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (263 aa)    
Predicted Functional Partners:
EDR97378.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 6.0e-14 sensory transduction protein kinase; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score: 9.99.
   
 0.864
EDR98021.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: shn:Shewana3_3829 1.7e-18 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; COG: COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
   
 0.804
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.748
EDR96379.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: dde:Dde_1697 2.0e-60 periplasmic sensor hybrid histidine kinase; COG: COG2202 FOG: PAS/PAC domain; Psort location: CytoplasmicMembrane, score: 9.49.
   
 0.746
EDR97789.1
Hypothetical protein; KEGG: eci:UTI89_C1702 6.4e-09 hypothetical protein; COG: COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; Psort location: Cytoplasmic, score: 8.87.
   
 0.743
EDR97587.1
PAS domain S-box protein; KEGG: syn:slr2104 2.3e-63 hik22; two-component hybrid histidine kinase K02486; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
   
 0.722
EDR96641.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
   
 0.722
EDR96642.1
PAS domain S-box protein; KEGG: azo:azo2482 6.0e-95 putative hybrid sensor and regulator; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
   
 0.722
EDR96036.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: syn:slr2104 4.6e-66 hik22; two-component hybrid histidine kinase K02486; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
   
 0.722
holB
DNA polymerase III, delta' subunit; KEGG: tte:TTE0097 1.5e-43 holB; ATPase involved in DNA replication K02341; COG: COG2812 DNA polymerase III, gamma/tau subunits; Psort location: Cytoplasmic, score: 8.87.
   
  0.689
Your Current Organism:
Anaerostipes caccae
NCBI taxonomy Id: 411490
Other names: A. caccae DSM 14662, Anaerostipes caccae DSM 14662
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