STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR97402.1Putative RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (166 aa)    
Predicted Functional Partners:
EDR97404.1
Transcriptional regulator, AsnC family; COG: COG1522 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.842
EDR97405.1
Hypothetical protein; KEGG: pto:PTO1289 5.3e-23 AIR Synthase K01933; COG: COG0309 Hydrogenase maturation factor; Psort location: Cytoplasmic, score: 8.87.
       0.842
EDR97403.1
Aminotransferase, class I/II; KEGG: cpr:CPR_0701 2.9e-125 aspartate aminotransferase K00811; COG: COG0436 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.823
EDR97401.1
Hypothetical protein; COG: COG5523 Predicted integral membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.731
EDR97400.1
Hypothetical protein; COG: COG5523 Predicted integral membrane protein; Psort location: CytoplasmicMembrane, score: 9.97.
       0.730
EDR97398.1
HDIG domain protein; KEGG: ctc:CTC01205 3.7e-102 tRNA nucleotidyltransferase (CCA-adding enzyme) K00974; COG: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Psort location: Cytoplasmic, score: 8.87.
       0.616
EDR97406.1
G5 domain protein; COG: COG2720 Uncharacterized vancomycin resistance protein.
       0.611
EDR97397.1
Glycerophosphodiester phosphodiesterase family protein; KEGG: mhy:mhp317 1.8e-15 glpQ; glycerophosphoryl diester phosphodiesterase K01126; COG: COG0584 Glycerophosphoryl diester phosphodiesterase; Psort location: Cytoplasmic, score: 8.87.
       0.578
proS
proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.578
ddl
D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
  
 0.572
Your Current Organism:
Anaerostipes caccae
NCBI taxonomy Id: 411490
Other names: A. caccae DSM 14662, Anaerostipes caccae DSM 14662
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