STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR97478.1Putative spore cortex biosynthesis protein YabQ; COG: NOG21894 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.26. (159 aa)    
Predicted Functional Partners:
yabP
Sporulation protein YabP; COG: NOG13819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.982
EDR98067.1
Putative sporulation protein YqfC; COG: NOG13846 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.943
EDR97480.1
S4 domain protein; KEGG: baa:BA_2880 5.1e-05 RNA pseudouridylate synthase K06182; COG: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
  
    0.886
hup
DNA-binding protein HU; COG: COG0776 Bacterial nucleoid DNA-binding protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial histone-like protein family.
  
    0.858
EDR97477.1
Putative cell division protein FtsL.
 
  
 0.851
EDR96237.1
LysM domain protein; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
  
     0.742
EDR96925.1
Transcriptional regulator, MerR family; COG: COG0789 Predicted transcriptional regulators.
  
     0.637
EDR98065.1
Putative sporulation protein YqfD; COG: NOG07866 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.622
EDR96241.1
Spore germination protein (amino acid permease); COG: NOG13194 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.598
EDR99163.1
KEGG: gka:GK1126 1.4e-12 spoIIGA; protease (sporulation sigma-E factor processing peptidase); COG: NOG09744 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.584
Your Current Organism:
Anaerostipes caccae
NCBI taxonomy Id: 411490
Other names: A. caccae DSM 14662, Anaerostipes caccae DSM 14662
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