STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR97478.1Putative spore cortex biosynthesis protein YabQ; COG: NOG21894 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.26. (159 aa)    
Predicted Functional Partners:
yabP
Sporulation protein YabP; COG: NOG13819 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.977
EDR98067.1
Putative sporulation protein YqfC; COG: NOG13846 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.931
EDR97480.1
S4 domain protein; KEGG: baa:BA_2880 5.1e-05 RNA pseudouridylate synthase K06182; COG: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
  
    0.876
EDR97477.1
Putative cell division protein FtsL.
 
    0.865
hup
DNA-binding protein HU; COG: COG0776 Bacterial nucleoid DNA-binding protein; Psort location: Cytoplasmic, score: 8.87; Belongs to the bacterial histone-like protein family.
  
    0.864
EDR96237.1
LysM domain protein; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
  
     0.742
EDR96925.1
Transcriptional regulator, MerR family; COG: COG0789 Predicted transcriptional regulators.
  
     0.637
EDR98065.1
Putative sporulation protein YqfD; COG: NOG07866 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.599
mreD
Rod shape-determining protein MreD; COG: NOG16883 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
    0.598
EDR96241.1
Spore germination protein (amino acid permease); COG: NOG13194 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.598
Your Current Organism:
Anaerostipes caccae
NCBI taxonomy Id: 411490
Other names: A. caccae DSM 14662, Anaerostipes caccae DSM 14662
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