STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR97163.1Hypothetical protein. (108 aa)    
Predicted Functional Partners:
EDR97162.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.958
EDR97161.1
Hypothetical protein; KEGG: ban:BA2345 2.5e-05 penicillin-binding protein 1A K05366; COG: NOG09916 non supervised orthologous group.
 
     0.920
EDR97164.1
Bacterial type II secretion system domain protein F; COG: COG2064 Flp pilus assembly protein TadC; Psort location: CytoplasmicMembrane, score: 7.63.
 
     0.913
EDR97165.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 7.63.
 
     0.913
cpaB
Flp pilus assembly protein CpaB; COG: NOG12619 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.903
EDR97166.1
Type II/IV secretion system protein; KEGG: reh:H16_B0187 3.5e-26 cpaF2; flp pilus assembly ATPase CpaF K01529; COG: COG4962 Flp pilus assembly protein, ATPase CpaF; Psort location: Cytoplasmic, score: 8.87.
 
     0.901
EDR97167.1
Hypothetical protein; COG: COG2894 Septum formation inhibitor-activating ATPase; Psort location: Cytoplasmic, score: 8.87.
 
     0.890
EDR97159.1
Hypothetical protein.
 
     0.887
EDR97170.1
Hypothetical protein.
 
     0.870
EDR97169.1
Peptidase, A24 family; KEGG: bsu:BG10323 9.0e-12 comC; leader peptidase (prepilin peptidase) / N-methyltransferase K02236; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.851
Your Current Organism:
Anaerostipes caccae
NCBI taxonomy Id: 411490
Other names: A. caccae DSM 14662, Anaerostipes caccae DSM 14662
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