STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR96325.1ABC transporter, ATP-binding protein; KEGG: mfl:Mfl511 9.6e-24 spermidine/putrescine ABC transporter ATP-binding component K02052; COG: COG4152 ABC-type uncharacterized transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49. (310 aa)    
Predicted Functional Partners:
EDR96324.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
    0.966
EDR97992.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0988 3.3e-46 ATPase K02003; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.843
EDR97184.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
 0.822
EDR95650.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
 0.811
EDR96525.1
Hypothetical protein; KEGG: bas:BUsg159 0.0071 nuoN; NADH dehydrogenase I chain N K00343; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
 0.810
EDR95734.1
Hypothetical protein; COG: NOG13457 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
 0.801
EDR97491.1
ABC-2 type transporter; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.779
EDR97961.1
ABC transporter, ATP-binding protein; KEGG: pen:PSEEN4987 2.0e-46 msbA; lipid A export ATP-binding/permease protein MsbA; COG: COG1132 ABC-type multidrug transport system, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.737
EDR97647.1
ABC-2 type transporter; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
 
 0.729
EDR97766.1
ABC-2 type transporter; COG: COG0842 ABC-type multidrug transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
 
 0.729
Your Current Organism:
Anaerostipes caccae
NCBI taxonomy Id: 411490
Other names: A. caccae DSM 14662, Anaerostipes caccae DSM 14662
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.