STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimIKEGG: dvu:DVU1678 6.3e-20 rimI; ribosomal-protein-alanine acetyltransferase K03789; COG: COG0456 Acetyltransferases; Psort location: Cytoplasmic, score: 9.98. (216 aa)    
Predicted Functional Partners:
yeaZ
Universal bacterial protein YeaZ; KEGG: ctc:CTC02444 8.9e-37 O-sialoglycoprotein endopeptidase K01409; COG: COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
  
 
 0.976
EDR96648.1
Hydrolase, P-loop family; KEGG: cjk:jk1734 1.7e-11 alr; hypothetical protein K01775; COG: COG0802 Predicted ATPase or kinase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.932
EDR96647.1
Hypothetical protein.
       0.820
tsaD
Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
  
 0.727
EDR99363.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: ava:Ava_0899 3.0e-75 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K00811; COG: COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.645
rnz
Ribonuclease Z; KEGG: cac:CAC1584 1.9e-82 ribonuclease Z K00784; COG: COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III; Psort location: Cytoplasmic, score: 8.87.
  
    0.642
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
  
  0.611
EDR97376.1
KEGG: lla:L0121 2.8e-159 lysA; diaminopimelate decarboxylase K01586; COG: COG0019 Diaminopimelate decarboxylase; Psort location: Cytoplasmic, score: 8.87.
   
 0.607
EDR98799.1
DNA-binding helix-turn-helix protein; KEGG: eba:ebA5278 1.6e-05 bzdR; regulator of the anaerobic catobolism of benzoate BzdR K00891; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.592
EDR97091.1
DNA-binding helix-turn-helix protein; KEGG: rpc:RPC_0098 6.4e-05 transcriptional regulator, XRE family with shikimate kinase activity K00891; COG: NOG36102 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.592
Your Current Organism:
Anaerostipes caccae
NCBI taxonomy Id: 411490
Other names: A. caccae DSM 14662, Anaerostipes caccae DSM 14662
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