STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ34129.2Von Willebrand factor type A domain protein. (569 aa)    
Predicted Functional Partners:
EDQ32663.1
Magnesium chelatase ATPase subunit I; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 0.948
EDQ32664.2
Mg-chelatase subunit ChlD.
  
 0.948
EDQ34128.1
Bacterial SH3 domain protein.
       0.763
EDQ33392.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
  
  
  0.700
EDQ32272.1
Flavodoxin reductase (ferredoxin-NADPH reductase) family 1.
   
 
  0.643
EDQ31643.1
Flavodoxin reductase (ferredoxin-NADPH reductase) family 1.
   
 
  0.643
EDQ34127.2
Hypothetical protein.
       0.635
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.548
EDQ34838.2
NHL repeat protein.
    
  0.513
EDQ32696.2
Magnesium chelatase, H subunit.
  
 0.508
Your Current Organism:
Hoeflea phototrophica
NCBI taxonomy Id: 411684
Other names: Ahrensia sp. DFL-43, H. phototrophica DFL-43, Hoeflea phototrophica DFL-43
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