STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDQ34190.2Hypothetical protein. (102 aa)    
Predicted Functional Partners:
EDQ34449.2
Glutamate synthase domain 2.
   
    0.676
EDQ32622.1
ATP-dependent DNA helicase RecQ.
  
  
  0.615
EDQ35107.1
Putative endonuclease containing a URI domain protein.
  
     0.600
EDQ34122.1
Putative endonuclease containing a URI domain protein.
  
     0.589
EDQ33702.1
Putative transcriptional regulator.
  
  
  0.577
EDQ34191.1
D-hydantoinase.
       0.573
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
  0.525
EDQ34189.2
Ribulose-5-phosphate 4-epimerase.
       0.445
EDQ34194.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.415
EDQ34195.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.408
Your Current Organism:
Hoeflea phototrophica
NCBI taxonomy Id: 411684
Other names: Ahrensia sp. DFL-43, H. phototrophica DFL-43, Hoeflea phototrophica DFL-43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.