Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCB08117.1 | SCB13430.1 | GA0061102_1001173 | GA0061102_100323 | Methionine adenosyltransferase; Belongs to the AdoMet synthase family. | DNA-methyltransferase (dcm). | 0.730 |
SCB08117.1 | SCB43111.1 | GA0061102_1001173 | GA0061102_103920 | Methionine adenosyltransferase; Belongs to the AdoMet synthase family. | DNA-binding transcriptional regulator, MerR family. | 0.710 |
SCB08117.1 | SCB49987.1 | GA0061102_1001173 | GA0061102_10817 | Methionine adenosyltransferase; Belongs to the AdoMet synthase family. | Adenosylhomocysteinase. | 0.822 |
SCB08117.1 | ahcY | GA0061102_1001173 | GA0061102_1008140 | Methionine adenosyltransferase; Belongs to the AdoMet synthase family. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.860 |
SCB08117.1 | nth | GA0061102_1001173 | GA0061102_102676 | Methionine adenosyltransferase; Belongs to the AdoMet synthase family. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.538 |
SCB08117.1 | rsmA | GA0061102_1001173 | GA0061102_102184 | Methionine adenosyltransferase; Belongs to the AdoMet synthase family. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.752 |
SCB08982.1 | SCB13430.1 | GA0061102_1001288 | GA0061102_100323 | Adenosylhomocysteine nucleosidase. | DNA-methyltransferase (dcm). | 0.631 |
SCB08982.1 | SCB43111.1 | GA0061102_1001288 | GA0061102_103920 | Adenosylhomocysteine nucleosidase. | DNA-binding transcriptional regulator, MerR family. | 0.615 |
SCB08982.1 | SCB49987.1 | GA0061102_1001288 | GA0061102_10817 | Adenosylhomocysteine nucleosidase. | Adenosylhomocysteinase. | 0.642 |
SCB08982.1 | ahcY | GA0061102_1001288 | GA0061102_1008140 | Adenosylhomocysteine nucleosidase. | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.664 |
SCB08982.1 | nth | GA0061102_1001288 | GA0061102_102676 | Adenosylhomocysteine nucleosidase. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.400 |
SCB08982.1 | rsmA | GA0061102_1001288 | GA0061102_102184 | Adenosylhomocysteine nucleosidase. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.635 |
SCB13430.1 | SCB08117.1 | GA0061102_100323 | GA0061102_1001173 | DNA-methyltransferase (dcm). | Methionine adenosyltransferase; Belongs to the AdoMet synthase family. | 0.730 |
SCB13430.1 | SCB08982.1 | GA0061102_100323 | GA0061102_1001288 | DNA-methyltransferase (dcm). | Adenosylhomocysteine nucleosidase. | 0.631 |
SCB13430.1 | SCB34362.1 | GA0061102_100323 | GA0061102_102212 | DNA-methyltransferase (dcm). | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. | 0.646 |
SCB13430.1 | SCB43111.1 | GA0061102_100323 | GA0061102_103920 | DNA-methyltransferase (dcm). | DNA-binding transcriptional regulator, MerR family. | 0.719 |
SCB13430.1 | SCB49987.1 | GA0061102_100323 | GA0061102_10817 | DNA-methyltransferase (dcm). | Adenosylhomocysteinase. | 0.561 |
SCB13430.1 | ahcY | GA0061102_100323 | GA0061102_1008140 | DNA-methyltransferase (dcm). | Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.561 |
SCB13430.1 | amn | GA0061102_100323 | GA0061102_100611 | DNA-methyltransferase (dcm). | AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations. | 0.543 |
SCB13430.1 | dnaG | GA0061102_100323 | GA0061102_101975 | DNA-methyltransferase (dcm). | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.475 |
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