Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCB24903.1 | SCB30779.1 | GA0061102_1010129 | GA0061102_101756 | Zinc/manganese transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family. | GTPase, G3E family. | 0.711 |
SCB24903.1 | rpmB | GA0061102_1010129 | GA0061102_103437 | Zinc/manganese transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family. | Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.830 |
SCB24903.1 | rpsN | GA0061102_1010129 | GA0061102_1004105 | Zinc/manganese transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.809 |
SCB30775.1 | SCB30779.1 | GA0061102_101755 | GA0061102_101756 | Creatinine amidohydrolase. | GTPase, G3E family. | 0.552 |
SCB30775.1 | SCB30784.1 | GA0061102_101755 | GA0061102_101757 | Creatinine amidohydrolase. | WD40 repeat. | 0.616 |
SCB30779.1 | SCB24903.1 | GA0061102_101756 | GA0061102_1010129 | GTPase, G3E family. | Zinc/manganese transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family. | 0.711 |
SCB30779.1 | SCB30775.1 | GA0061102_101756 | GA0061102_101755 | GTPase, G3E family. | Creatinine amidohydrolase. | 0.552 |
SCB30779.1 | SCB30784.1 | GA0061102_101756 | GA0061102_101757 | GTPase, G3E family. | WD40 repeat. | 0.910 |
SCB30779.1 | SCB45384.1 | GA0061102_101756 | GA0061102_104838 | GTPase, G3E family. | Cobaltochelatase CobN. | 0.533 |
SCB30779.1 | dksA | GA0061102_101756 | GA0061102_103662 | GTPase, G3E family. | Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | 0.692 |
SCB30779.1 | map | GA0061102_101756 | GA0061102_1004218 | GTPase, G3E family. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.758 |
SCB30779.1 | map-2 | GA0061102_101756 | GA0061102_104060 | GTPase, G3E family. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.758 |
SCB30779.1 | rpmB | GA0061102_101756 | GA0061102_103437 | GTPase, G3E family. | Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.679 |
SCB30779.1 | rpmG | GA0061102_101756 | GA0061102_100441 | GTPase, G3E family. | LSU ribosomal protein L33P /LSU ribosomal protein MRPL33P; Belongs to the bacterial ribosomal protein bL33 family. | 0.604 |
SCB30779.1 | rpsN | GA0061102_101756 | GA0061102_1004105 | GTPase, G3E family. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.729 |
SCB30784.1 | SCB30775.1 | GA0061102_101757 | GA0061102_101755 | WD40 repeat. | Creatinine amidohydrolase. | 0.616 |
SCB30784.1 | SCB30779.1 | GA0061102_101757 | GA0061102_101756 | WD40 repeat. | GTPase, G3E family. | 0.910 |
SCB30784.1 | map | GA0061102_101757 | GA0061102_1004218 | WD40 repeat. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.783 |
SCB30784.1 | map-2 | GA0061102_101757 | GA0061102_104060 | WD40 repeat. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.783 |
SCB45384.1 | SCB30779.1 | GA0061102_104838 | GA0061102_101756 | Cobaltochelatase CobN. | GTPase, G3E family. | 0.533 |
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