STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB39806.1Outer membrane autotransporter barrel domain-containing protein. (367 aa)    
Predicted Functional Partners:
SCB17059.1
Lysophospholipase L1.
   
 0.857
SCB29654.1
acyl-CoA thioesterase-1.
   
 0.857
SCB16235.1
Hypothetical protein.
  
     0.762
SCB16228.1
Hypothetical protein.
  
     0.749
SCB16242.1
Hypothetical protein.
  
     0.745
SCB16247.1
OmpA family protein.
  
     0.745
SCB25733.1
Beta-glucanase, GH16 family.
  
 
 0.736
SCB27212.1
Protein of unknown function.
  
     0.727
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.676
SCB46543.1
Alpha/beta hydrolase family protein.
  
 
   0.672
Your Current Organism:
Rhizobium miluonense
NCBI taxonomy Id: 411945
Other names: CCBAU 41251, HAMBI 2971, LMG 24208, LMG:24208, R. miluonense, Rhizobium miluonense Gu et al. 2008, Rhizobium sp. CCBAU 41251
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.