STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB40503.1Transcriptional regulator, DeoR family. (261 aa)    
Predicted Functional Partners:
SCB38624.1
Acetyltransferase (GNAT) family protein.
    
   0.760
SCB40508.1
Sugar phosphate permease.
       0.712
SCB35090.1
Ribose 5-phosphate isomerase B.
  
 
 0.524
SCB40497.1
Benzoate membrane transport protein.
       0.500
SCB08398.1
PTS IIA-like nitrogen-regulatory protein PtsN.
 
  
 0.491
SCB14026.1
PTS system, nitrogen regulatory IIA component.
 
  
 0.488
SCB46681.1
Acetyltransferase.
    
   0.418
Your Current Organism:
Rhizobium miluonense
NCBI taxonomy Id: 411945
Other names: CCBAU 41251, HAMBI 2971, LMG 24208, LMG:24208, R. miluonense, Rhizobium miluonense Gu et al. 2008, Rhizobium sp. CCBAU 41251
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.