STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCB42471.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (227 aa)    
Predicted Functional Partners:
SCB43476.1
PAS domain S-box-containing protein.
 
 0.979
SCB42475.1
Signal transduction histidine kinase.
  0.970
SCB38593.1
PAS domain S-box-containing protein.
 
 0.960
SCB22496.1
PAS domain-containing protein.
 
 0.938
SCB42292.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
 
 0.935
SCB24200.1
PAS domain S-box-containing protein.
 
 
 0.921
SCB33004.1
PAS domain S-box-containing protein.
 
  0.891
SCB08284.1
Signal transduction histidine kinase.
 
 0.890
SCB19333.1
Two-component system, cell cycle sensor histidine kinase PleC.
 
  0.886
SCB12281.1
Signal transduction histidine kinase.
  0.873
Your Current Organism:
Rhizobium miluonense
NCBI taxonomy Id: 411945
Other names: CCBAU 41251, HAMBI 2971, LMG 24208, LMG:24208, R. miluonense, Rhizobium miluonense Gu et al. 2008, Rhizobium sp. CCBAU 41251
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