Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDU_195 | BDU_197 | BDU_195 | BDU_197 | HemK family methylase. | Uncharacterized conserved protein. | 0.818 |
BDU_195 | BDU_629 | BDU_195 | BDU_629 | HemK family methylase. | N-acetylmuramoyl-L-alanine amidase, putative. | 0.568 |
BDU_195 | BDU_738 | BDU_195 | BDU_738 | HemK family methylase. | Uncharacterized conserved protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | 0.607 |
BDU_195 | atpK | BDU_195 | BDU_93 | HemK family methylase. | V-type ATPase, subunit K. | 0.852 |
BDU_195 | hisS | BDU_195 | BDU_139 | HemK family methylase. | histidyl-tRNA synthetase. | 0.549 |
BDU_195 | metG | BDU_195 | BDU_589 | HemK family methylase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.635 |
BDU_195 | prfA | BDU_195 | BDU_194 | HemK family methylase. | Peptide chain release factor A; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.998 |
BDU_195 | spoT | BDU_195 | BDU_196 | HemK family methylase. | Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.818 |
BDU_195 | tilS | BDU_195 | BDU_794 | HemK family methylase. | Cell cycle protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.622 |
BDU_195 | topA | BDU_195 | BDU_840 | HemK family methylase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.590 |
BDU_197 | BDU_195 | BDU_197 | BDU_195 | Uncharacterized conserved protein. | HemK family methylase. | 0.818 |
BDU_197 | prfA | BDU_197 | BDU_194 | Uncharacterized conserved protein. | Peptide chain release factor A; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.805 |
BDU_197 | spoT | BDU_197 | BDU_196 | Uncharacterized conserved protein. | Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.818 |
BDU_629 | BDU_195 | BDU_629 | BDU_195 | N-acetylmuramoyl-L-alanine amidase, putative. | HemK family methylase. | 0.568 |
BDU_629 | metG | BDU_629 | BDU_589 | N-acetylmuramoyl-L-alanine amidase, putative. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.620 |
BDU_629 | spoT | BDU_629 | BDU_196 | N-acetylmuramoyl-L-alanine amidase, putative. | Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.635 |
BDU_738 | BDU_195 | BDU_738 | BDU_195 | Uncharacterized conserved protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | HemK family methylase. | 0.607 |
BDU_738 | metG | BDU_738 | BDU_589 | Uncharacterized conserved protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.607 |
BDU_738 | topA | BDU_738 | BDU_840 | Uncharacterized conserved protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.590 |
atpK | BDU_195 | BDU_93 | BDU_195 | V-type ATPase, subunit K. | HemK family methylase. | 0.852 |
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