STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbp-3Penicillin-binding protein. (925 aa)    
Predicted Functional Partners:
dacA
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 0.931
BDU_585
Carboxypeptidase, putative.
     
  0.900
BDU_734
Uncharacterized conserved protein.
 
     0.844
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.727
pbp-1
Penicillin-binding protein.
 
 
 
 0.642
BDU_629
N-acetylmuramoyl-L-alanine amidase, putative.
  
  
 0.616
gltP
Glutamate transporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.613
nox
NADH oxidase, water-forming.
       0.603
pbp-2
Penicillin-binding protein.
 
 
 
0.511
mreB-2
Rod shape-determining protein; Belongs to the SEDS family.
  
   
 0.504
Your Current Organism:
Borrelia duttonii
NCBI taxonomy Id: 412419
Other names: B. duttonii Ly, Borrelia duttonii Ly, Borrelia duttonii str. Ly, Borrelia duttonii strain Ly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.