STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR72395.1ABC-2 type transport system ATP-binding protein. (299 aa)    
Predicted Functional Partners:
SDR72425.1
ABC-2 type transport system permease protein.
  
 0.979
SDR81317.1
Glycine betaine/proline transport system ATP-binding protein.
    
0.906
SDS13444.1
Branched-chain amino acid transport system ATP-binding protein.
     
0.900
SDR75063.1
NitT/TauT family transport system ATP-binding protein.
     
0.770
SDR93415.1
Signal transduction histidine kinase.
 
     0.725
SDS10837.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
      0.674
SDR72454.1
L-threonine aldolase.
       0.482
SDS19421.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
     
0.472
SDT22950.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
     
0.437
SDT35258.1
Amino acid ABC transporter membrane protein, PAAT family.
      0.421
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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