STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR81595.1Zinc/manganese transport system permease protein. (300 aa)    
Predicted Functional Partners:
SDR81538.1
Zinc/manganese transport system ATP-binding protein.
 
 0.999
SDR81502.1
Zinc/manganese transport system substrate-binding protein.
 
  
 0.997
SDR98374.1
Hypothetical protein.
  
 
 0.919
SDR81628.1
Zinc uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.898
SDR97960.1
Manganese transport protein.
  
  
 0.708
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.647
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.573
SDR81449.1
Protein N-acetyltransferase, RimJ/RimL family.
       0.567
rpmG
LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.553
SDS93392.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
       0.461
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.