STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR84267.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
SDR84200.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
 
     0.837
SDS94270.1
Phospholipase_D-nuclease N-terminal.
 
     0.769
SDR90715.1
Phospholipase_D-nuclease N-terminal.
 
     0.766
SDT30296.1
Phospholipase_D-nuclease N-terminal.
 
     0.766
dcd
dCTP deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.
       0.762
SDS94372.1
Short C-terminal domain-containing protein.
 
     0.757
SDS94417.1
Hypothetical protein.
 
     0.750
SDR90964.1
H+/Cl-antiporter ClcA.
 
     0.737
SDS78091.1
Short C-terminal domain-containing protein.
 
     0.689
SDS22036.1
Hypothetical protein.
 
     0.643
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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