STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR89950.1Thioredoxin reductase. (310 aa)    
Predicted Functional Partners:
SDS03625.1
Methyltransferase domain-containing protein.
 
  
 0.913
SDR89872.1
Transcriptional regulator, contains XRE-family HTH domain.
 
    0.733
SDT20246.1
Thioredoxin.
  
 
 0.663
SDR80042.1
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.657
SDR90001.1
Hypothetical protein.
       0.653
SDS06314.1
Cytochrome c biogenesis protein CcdA.
  
 
 0.580
SDS56983.1
Putative thioredoxin.
  
 
 0.567
SDS34019.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 
 0.555
SDS40974.1
Hypothetical protein.
  
 
 0.467
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
 
 0.464
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.