STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR94344.13-oxoadipate CoA-transferase alpha subunit. (250 aa)    
Predicted Functional Partners:
SDR94415.1
3-oxoadipate CoA-transferase beta subunit.
 
 0.999
SDT05744.1
3-oxoacid CoA-transferase subunit B.
 
 0.998
SDR94493.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.907
SDR94555.1
Transcriptional regulator, IclR family.
  
  
 0.780
SDR94288.1
Ribosomal protein S18 acetylase RimI.
       0.574
SDS42958.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
  
 0.538
SDS26850.1
acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.
  
  
 0.512
SDT03845.1
Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
     
 0.439
SDT26458.1
Short-chain fatty acids transporter.
 
  
 0.430
SDT03886.1
Acyl dehydratase.
     
 0.426
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.