STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR95914.1NitT/TauT family transport system permease protein. (323 aa)    
Predicted Functional Partners:
SDR95975.1
NitT/TauT family transport system ATP-binding protein.
 
  
 0.980
SDR96063.1
NitT/TauT family transport system substrate-binding protein.
 
  
 0.941
SDR95866.1
F420-dependent oxidoreductase, CPS_4043 family.
 
    0.939
SDR95810.1
Dihydropyrimidinase.
 
     0.844
SDR96023.1
NitT/TauT family transport system permease protein.
 
    
0.834
SDR75063.1
NitT/TauT family transport system ATP-binding protein.
 
  
 0.761
SDR75024.1
NitT/TauT family transport system substrate-binding protein; Non-canonical start codon; manually curated.
 
  
 0.650
SDR95766.1
N-carbamoylputrescine amidase.
 
    0.629
SDR96113.1
Taurine---2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.580
SDR95710.1
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.
 
   
 0.562
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.