STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR97915.1Iron (metal) dependent repressor, DtxR family. (213 aa)    
Predicted Functional Partners:
SDR97960.1
Manganese transport protein.
 
  
 0.860
SDS73132.1
NAD-dependent protein deacetylase, SIR2 family.
  
    0.623
SDS89986.1
Hypothetical protein; Manually curated.
   
    0.616
SDR98018.1
SpoU rRNA Methylase family protein.
       0.560
SDR97873.1
NagD protein; Belongs to the HAD-like hydrolase superfamily.
  
    0.541
SDS67943.1
Glutamate synthase (NADH) large subunit.
       0.491
SDR71520.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
 
 0.486
metN
D-methionine transport system ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.453
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.