STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS00890.16-phosphogluconolactonase, cycloisomerase 2 family. (348 aa)    
Predicted Functional Partners:
SDS00837.1
D-serine deaminase, pyridoxal phosphate-dependent.
 
     0.739
SDS00791.1
2-keto-3-deoxy-phosphogluconate aldolase.
 
   
 0.719
SDS00657.1
N-acyl-D-amino-acid deacylase.
 
     0.714
SDS00742.1
2-dehydro-3-deoxygluconokinase.
       0.611
cutC
Copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
    0.535
SDS00594.1
DNA-binding transcriptional regulator, IclR family.
  
    0.467
SDS00939.1
Hypothetical protein.
       0.434
SDS00996.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
 
     0.433
SDS99843.1
Uncharacterized membrane protein YccC.
 
     0.405
SDR84609.1
L-fuconolactonase.
 
     0.401
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.