STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS01407.1Very-short-patch-repair endonuclease. (331 aa)    
Predicted Functional Partners:
SDS20177.1
Hypothetical protein.
 
     0.727
SDS76879.1
Hypothetical protein.
 
     0.722
SDT32243.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
 
     0.582
SDS87939.1
Protein of unknown function.
 
     0.554
SDS58679.1
Protein of unknown function.
 
     0.550
SDS42776.1
Protein of unknown function.
 
     0.547
SDT14762.1
Protein of unknown function.
 
     0.535
SDS32810.1
Protein of unknown function.
 
     0.530
SDS09198.1
Protein of unknown function.
 
     0.527
SDT11203.1
Protein of unknown function.
 
     0.520
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.