STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS11948.1LysR substrate binding domain-containing protein. (257 aa)    
Predicted Functional Partners:
SDS12001.1
Hypothetical protein.
 
   
 0.930
SDS11899.1
GMP synthase (glutamine-hydrolysing).
       0.778
SDS67943.1
Glutamate synthase (NADH) large subunit.
  
  
 0.548
SDS41305.1
ABC-2 type transport system permease protein.
 
     0.478
SDS37532.1
Hypothetical protein.
 
     0.459
SDR83465.1
DNA-binding transcriptional regulator, AcrR family.
 
   0.436
SDS77881.1
RDD family protein.
 
     0.404
SDS22483.1
ATP-binding cassette, subfamily B.
 
    0.400
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.