STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS21413.12-hydroxy-3-oxopropionate reductase. (308 aa)    
Predicted Functional Partners:
SDR75507.1
enoyl-CoA hydratase.
 
  
 0.903
SDS21467.1
3-hydroxyisobutyrate dehydrogenase.
 
    
0.827
SDS21361.1
Predicted homoserine dehydrogenase, contains C-terminal SAF domain.
       0.778
SDS21308.1
Transcriptional regulator, LacI family.
   
   0.610
SDS21884.1
Uncharacterized conserved protein YgbK, DUF1537 family.
  
 0.566
SDS43184.1
4-carboxymuconolactone decarboxylase.
 
  
 0.499
SDS63505.1
3-hydroxyacyl-CoA dehydrogenase.
  
  
 0.448
SDS94227.1
Carboxymuconolactone decarboxylase family protein.
  
    0.407
SDT20944.1
Carboxymuconolactone decarboxylase family protein.
  
    0.407
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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