STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS21623.1Homodimeric dihydroxyacetone kinase. (579 aa)    
Predicted Functional Partners:
SDS21673.1
Ribose 5-phosphate isomerase B.
 
  
 0.852
SDS75931.1
Phosphocarrier protein HPr /dihydroxyacetone kinase DhaM subunit.
 
 
 0.816
SDS46468.1
Deoxyribonucleoside regulator.
      0.704
SDS21725.1
DNA-binding transcriptional regulator, GntR family.
       0.637
SDS21575.1
Sugar phosphate isomerase/epimerase.
 
     0.625
SDS21520.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
   0.599
SDS25065.1
DNA-binding transcriptional regulator LsrR, DeoR family.
      0.468
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.